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Tutorial: Using Nextstrain for SARS-CoV-2

Analysis

1. Setup and installation
2. Preparing your data
3. Orientation: analysis workflow
4. Orientation: files
5. Running & troubleshooting
6. Customizing your analysis
7. Customizing your visualization

Visualization & interpretation

8. Options: visualizing and sharing
9. Interpreting your results
10. Writing a narrative

Stuck? Ask us on the discussion board. We're happy to help!

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Guidance for interpretation

Introductory resources

Case Studies

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