Auspice

Auspice

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›Customisations

Introduction

  • Overview
  • Installing auspice
  • Input file formats

Customisations

  • Extending Auspice
  • Customising the Client

    • Injecting custom components
    • Sidebar theming

    Customising the Server

    • Auspice Server API
    • Deploying auspice without a server
  • Authentication

Tutorial

  • Auspice functionality

Extending Auspice

It's possible to "extend" auspice and change the aesthetics and/or functionality. This allows custom builds of auspice each with their own appearence. nextstrain.org is one such custom build.

Developing and building auspice with extensions.

Auspice has two forms of extensions:

Client extensions

Customising the appearence and functionality of the client is achieved through code injection at build time. The available customisations are accessed through a <clientConfig> JSON with the following properties:

  • "splashComponent" -- see custom components
  • "navbarComponent" -- see custom components
  • "browserTitle" -- the page title (i.e. the name in the tab of the browser window)
  • "sidebarTheme" -- see visual themes
  • "entryPage" -- not yet documented
  • "hardcodedDataPaths" -- not yet documented, see these docs.

Server extensions

The client makes a number of requests which can be dynamically handled. Alternativly, the files can defined at build time such that no server is needed. See these docs for how to define the <serverHandlers> javascript file.

Developing & Building custom auspice versions

While it's possible to run these commands from the auspice source directory (using node auspice.js ...), it's preferable to run them from the repo containing the client / server customisations. This requires auspice to be installed globally (see above).

## DEVELOPMENT
auspice develop --verbose --extend <clientConfig> --handlers <serverHandlers>
## BUILD
auspice build --verbose --extend <clientConfig>
## VIEW (using auspice server with custom handlers)
auspice view --verbose --handlers <serverHandlers> --customBuild

Examples of customisations:

  • Auspice.us -- to do
  • Nextstrain -- documentation
  • ZEBOV (serverless) -- documentation
  • Simulated viral outbreak for a ARTIC workshop in Ghana -- here
Last updated on 1/2/2019
← Input file formatsInjecting custom components →
  • Developing and building auspice with extensions.
    • Client extensions
    • Server extensions
    • Developing & Building custom auspice versions
  • Examples of customisations:
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If you use auspice, please cite Hadfield et al., 2018
Copyright © 2014-2019 Richard Neher & Trevor Bedford