Pathogen workflow status

Generated at by nextstrain/status for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic-ncbi.yaml)

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Phylogenetic NCBI (.github/workflows/phylogenetic-ncbi.yaml)

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dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 6f9144f7
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forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

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GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

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Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

  1. run details repository_dispatch 31a6163d
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Run models (.github/workflows/run-models.yaml)

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lassa #

Ingest (.github/workflows/ingest.yaml)

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  2. run details workflow_dispatch e5eafb2c

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch e072b36b

measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule bde57d18
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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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  11. 🛇
    run details schedule af33cf20
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Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

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Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

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Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

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Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

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ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

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Rebuild GISAID 21L phylogenetic datasets (.github/workflows/rebuild-gisaid-21L.yml)

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Rebuild GISAID phylogenetic datasets (.github/workflows/rebuild-gisaid.yml)

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Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

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ncov-ingest #

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

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GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

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  2. run details schedule c1af4b7e
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  28. run details schedule c1af4b7e
  29. run details schedule c1af4b7e
  30. run details schedule c1af4b7e

nipah #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch a93ef614

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule e52d1316
  2. run details schedule e52d1316
  3. run details schedule e52d1316
  4. run details schedule e52d1316
  5. run details schedule e52d1316
  6. run details schedule e52d1316
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  23. run details schedule cba29837
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  26. run details schedule cba29837
  27. run details schedule cba29837
  28. run details schedule cba29837
  29. run details schedule cba29837
  30. run details schedule cba29837

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch a93ef614

oropouche #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule b7a40e4b
  2. run details schedule b7a40e4b
  3. run details schedule b7a40e4b
  4. run details schedule b7a40e4b
  5. run details schedule b7a40e4b
  6. run details schedule b7a40e4b
  7. run details schedule b7a40e4b
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  20. run details schedule b7a40e4b
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  22. run details schedule b7a40e4b
  23. run details schedule b7a40e4b
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  25. run details schedule 86b72962
  26. run details schedule 86b72962
  27. run details schedule 86b72962
  28. run details schedule 86b72962
  29. run details schedule 86b72962
  30. run details schedule 86b72962

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch 357dbfea
  2. run details workflow_dispatch 357dbfea
  3. run details workflow_dispatch e0df494c
  4. run details workflow_dispatch e0df494c

rabies #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 01f492a2
  2. run details schedule 01f492a2
  3. run details schedule 01f492a2
  4. run details schedule 01f492a2
  5. run details schedule 01f492a2
  6. run details schedule 01f492a2
  7. run details schedule 01f492a2
  8. run details schedule 01f492a2
  9. run details schedule 01f492a2
  10. run details schedule 01f492a2
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  18. run details schedule 01f492a2
  19. run details schedule 01f492a2
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  26. run details schedule 01f492a2
  27. run details schedule 01f492a2
  28. run details schedule 01f492a2
  29. run details schedule 01f492a2
  30. run details schedule 01f492a2

rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule 032ea5d8
  2. run details schedule 032ea5d8
  3. run details schedule 032ea5d8
  4. run details schedule 032ea5d8
  5. run details schedule 211ba447
  6. run details schedule 211ba447
  7. run details schedule 211ba447
  8. run details schedule 211ba447
  9. run details schedule 211ba447
  10. run details schedule 211ba447
  11. run details schedule 211ba447
  12. run details schedule 211ba447

Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. run details schedule 032ea5d8
  2. run details schedule 032ea5d8
  3. run details schedule 032ea5d8
  4. run details schedule 032ea5d8
  5. run details schedule 211ba447
  6. run details schedule 211ba447
  7. run details schedule 211ba447
  8. run details schedule 211ba447
  9. run details schedule 211ba447
  10. run details schedule 211ba447
  11. run details schedule 211ba447
  12. run details schedule 211ba447

seasonal-cov #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule d9ae40cf
  2. run details schedule d9ae40cf
  3. run details schedule d9ae40cf
  4. run details schedule d9ae40cf
  5. run details schedule d9ae40cf
  6. run details schedule d9ae40cf
  7. run details schedule d9ae40cf
  8. run details schedule d9ae40cf
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  20. run details schedule d9ae40cf
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  25. run details schedule d9ae40cf
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  27. run details schedule d9ae40cf
  28. run details schedule d9ae40cf
  29. run details schedule d9ae40cf
  30. run details schedule d9ae40cf

seasonal-flu #

Run Nextclade on all sequences (.github/workflows/run-nextclade.yaml)

  1. run details workflow_dispatch 20c935b9
  2. run details workflow_dispatch a0107400
  3. run details workflow_dispatch caa97a15
  4. run details workflow_dispatch 39a4cd9b
  5. run details workflow_dispatch efaf11b4
  6. run details workflow_dispatch c5ae1536
  7. run details workflow_dispatch 3b7ce7a1
  8. run details workflow_dispatch b0ff43d8
  9. run details workflow_dispatch 3df11d05
  10. run details workflow_dispatch e4fa9327
  11. run details workflow_dispatch 451aa8ec
  12. run details workflow_dispatch de6a7ef8
  13. run details workflow_dispatch 1677cc2e

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. run details workflow_dispatch 20c935b9
  2. run details workflow_dispatch a0107400
  3. run details workflow_dispatch caa97a15
  4. run details workflow_dispatch efaf11b4
  5. run details workflow_dispatch c5ae1536
  6. run details workflow_dispatch 3b7ce7a1
  7. run details workflow_dispatch b0ff43d8
  8. run details workflow_dispatch 3df11d05
  9. run details workflow_dispatch e4fa9327
  10. run details workflow_dispatch e207fe49
  11. run details workflow_dispatch 451aa8ec
  12. run details workflow_dispatch de6a7ef8
  13. run details workflow_dispatch 1677cc2e

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. run details workflow_dispatch 20c935b9
  2. run details workflow_dispatch a0107400
  3. run details workflow_dispatch caa97a15
  4. run details workflow_dispatch efaf11b4
  5. run details workflow_dispatch c5ae1536
  6. run details workflow_dispatch 3b7ce7a1
  7. run details workflow_dispatch b0ff43d8
  8. run details workflow_dispatch 3df11d05
  9. run details workflow_dispatch e4fa9327
  10. run details workflow_dispatch 451aa8ec
  11. run details workflow_dispatch de6a7ef8
  12. run details workflow_dispatch 1677cc2e

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. run details workflow_dispatch 20c935b9
  2. run details workflow_dispatch a0107400
  3. run details workflow_dispatch caa97a15
  4. run details workflow_dispatch efaf11b4
  5. run details workflow_dispatch c5ae1536
  6. run details workflow_dispatch 3b7ce7a1
  7. run details workflow_dispatch b0ff43d8
  8. run details workflow_dispatch 3df11d05
  9. run details workflow_dispatch e4fa9327
  10. run details workflow_dispatch 451aa8ec
  11. run details workflow_dispatch de6a7ef8
  12. run details workflow_dispatch 1677cc2e

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. run details workflow_dispatch 20c935b9
  2. run details workflow_dispatch a0107400
  3. run details workflow_dispatch 3477eaca
  4. run details workflow_dispatch efaf11b4
  5. run details workflow_dispatch 3b7ce7a1
  6. run details workflow_dispatch b0ff43d8
  7. run details workflow_dispatch 3df11d05
  8. run details workflow_dispatch e4fa9327
  9. run details workflow_dispatch 451aa8ec
  10. run details workflow_dispatch de6a7ef8
  11. run details workflow_dispatch 1677cc2e

WNV #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch 3556b10a

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 388c15a2
  2. run details schedule 388c15a2
  3. run details schedule 388c15a2
  4. run details schedule 388c15a2
  5. run details schedule 388c15a2
  6. run details schedule 388c15a2
  7. run details schedule 388c15a2
  8. run details schedule e7f5f7c7
  9. run details schedule e7f5f7c7
  10. run details schedule 828e323c
  11. 🛇
    run details schedule 68d122c9
  12. run details schedule 042d799a
  13. run details schedule 3556b10a
  14. run details schedule 3556b10a
  15. run details schedule 3556b10a
  16. run details schedule 3556b10a
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  18. run details schedule 20237eca
  19. run details schedule 20237eca
  20. run details schedule 20237eca
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  22. run details schedule 20237eca
  23. run details schedule 20237eca
  24. run details schedule 20237eca
  25. run details schedule 20237eca
  26. run details schedule 20237eca
  27. run details schedule 20237eca
  28. run details schedule 20237eca
  29. run details schedule b90c25a1
  30. run details schedule b90c25a1

zika #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 649e495a
  2. run details schedule 649e495a
  3. run details schedule 649e495a
  4. run details schedule b8343f7f
  5. run details workflow_dispatch b8343f7f
  6. run details schedule b8343f7f
  7. run details schedule b8343f7f
  8. run details schedule b8343f7f
  9. run details schedule b8343f7f
  10. run details schedule b8343f7f
  11. run details schedule b8343f7f
  12. run details schedule b8343f7f
  13. run details schedule b8343f7f
  14. run details schedule b8343f7f
  15. run details schedule b8343f7f
  16. run details schedule b8343f7f
  17. run details schedule b8343f7f
  18. run details schedule b8343f7f
  19. run details schedule b8343f7f
  20. run details schedule b8343f7f
  21. run details schedule b8343f7f
  22. run details schedule b8343f7f
  23. run details schedule b8343f7f
  24. run details schedule b8343f7f
  25. run details schedule b8343f7f
  26. run details schedule b8343f7f
  27. run details schedule b8343f7f
  28. run details schedule b8343f7f
  29. run details schedule b8343f7f
  30. run details schedule b8343f7f

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch b8343f7f