Pathogen workflow status

Generated at for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest NCBI (.github/workflows/ingest-ncbi.yaml)

  1. run details schedule 5763ebb2
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  23. run details schedule a4f85d2e
  24. 🛇
    run details schedule e4825ea0
  25. run details workflow_dispatch de7805ee
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dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 011bea30
  2. run details schedule 011bea30
  3. run details schedule 011bea30
  4. run details schedule 011bea30
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  8. run details schedule 7bde2adf
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch 26a536a0
  2. run details workflow_dispatch e720a96f
  3. 🛇
    run details workflow_dispatch e720a96f
  4. run details workflow_dispatch f3232c32
  5. 🛇
    run details workflow_dispatch e79a8cd5

forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

  1. run details schedule 56f77400
  2. run details schedule 56f77400
  3. run details schedule 56f77400
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  27. run details schedule 56f77400
  28. run details schedule 56f77400
  29. run details workflow_dispatch 56f77400
  30. run details schedule 7c402eeb

GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

  1. run details repository_dispatch 56f77400
  2. run details repository_dispatch 56f77400
  3. run details repository_dispatch 56f77400
  4. run details repository_dispatch 56f77400
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  7. run details repository_dispatch 56f77400
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  25. run details repository_dispatch 7c402eeb
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  27. run details workflow_dispatch 7c402eeb
  28. run details repository_dispatch 00b9f236
  29. run details repository_dispatch 00b9f236
  30. run details repository_dispatch 00b9f236

Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

  1. run details repository_dispatch 56f77400
  2. run details repository_dispatch 56f77400
  3. run details repository_dispatch 56f77400
  4. run details repository_dispatch 56f77400
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  27. run details repository_dispatch 7c402eeb
  28. run details workflow_dispatch 7c402eeb
  29. run details repository_dispatch 00b9f236
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Run models (.github/workflows/run-models.yaml)

  1. run details workflow_dispatch 56f77400
  2. run details workflow_dispatch 56f77400
  3. run details workflow_dispatch 56f77400
  4. run details workflow_dispatch 56f77400
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  27. run details workflow_dispatch 56f77400
  28. run details workflow_dispatch 56f77400
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  30. run details workflow_dispatch 56f77400

hbv #

Run the builds (.github/workflows/run-builds.yaml)

  1. run details workflow_dispatch e3620055

measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 7f2c201d
  2. run details schedule 7f2c201d
  3. run details schedule 03c78bf0
  4. run details schedule 03c78bf0
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  29. run details schedule f87ffca7
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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule d6702c4d
  2. run details schedule d6702c4d
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  15. run details schedule e6bc293c
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  24. run details schedule fa8e824d
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Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

  1. run details repository_dispatch d6702c4d
  2. run details repository_dispatch 33ba684a
  3. run details repository_dispatch 33ba684a
  4. run details workflow_dispatch e6bc293c

Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

  1. run details repository_dispatch d6702c4d
  2. run details repository_dispatch 33ba684a
  3. run details repository_dispatch 33ba684a
  4. run details repository_dispatch fa8e824d
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  6. run details repository_dispatch 7f5adc3c
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  11. run details repository_dispatch b91a9ffc
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Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

  1. run details repository_dispatch d6702c4d
  2. run details repository_dispatch 33ba684a
  3. run details repository_dispatch 33ba684a
  4. run details repository_dispatch fa8e824d
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  27. run details repository_dispatch e439235f
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Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

  1. run details repository_dispatch d6702c4d
  2. run details repository_dispatch 33ba684a
  3. run details repository_dispatch 33ba684a
  4. run details repository_dispatch fa8e824d
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  18. run details repository_dispatch d7a55816
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  27. run details repository_dispatch a504d879
  28. run details repository_dispatch e439235f
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ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

  1. run details schedule 0336d0e1
  2. run details schedule eb488d62
  3. run details schedule eb488d62
  4. run details schedule 6f58ff7a
  5. run details schedule 3ab3ed56
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  10. run details schedule efc0b81d
  11. run details schedule c3dfb153
  12. run details schedule c3dfb153
  13. run details schedule 1f7265a7

Rebuild GISAID 21L phylogenetic datasets (.github/workflows/rebuild-gisaid-21L.yml)

  1. run details repository_dispatch e6c914a3
  2. run details repository_dispatch 30a0060f
  3. run details repository_dispatch 0336d0e1
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  11. run details repository_dispatch 6f58ff7a
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  13. run details repository_dispatch 3ab3ed56
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  27. run details repository_dispatch efc0b81d
  28. run details repository_dispatch efc0b81d
  29. run details repository_dispatch c3dfb153
  30. run details repository_dispatch c3dfb153

Rebuild GISAID phylogenetic datasets (.github/workflows/rebuild-gisaid.yml)

  1. run details repository_dispatch e6c914a3
  2. run details repository_dispatch 30a0060f
  3. run details repository_dispatch 0336d0e1
  4. run details repository_dispatch eb488d62
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  6. run details repository_dispatch eb488d62
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  10. run details repository_dispatch 6f58ff7a
  11. run details repository_dispatch 6f58ff7a
  12. run details repository_dispatch 3ab3ed56
  13. run details repository_dispatch 3ab3ed56
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  26. run details repository_dispatch efc0b81d
  27. run details repository_dispatch efc0b81d
  28. run details repository_dispatch c3dfb153
  29. run details repository_dispatch c3dfb153
  30. run details repository_dispatch c3dfb153

Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

  1. run details repository_dispatch e6c914a3
  2. run details repository_dispatch e6c914a3
  3. run details repository_dispatch 30a0060f
  4. run details repository_dispatch 30a0060f
  5. run details repository_dispatch 0336d0e1
  6. run details repository_dispatch 0336d0e1
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  23. run details repository_dispatch 6f58ff7a
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  28. run details repository_dispatch 3ab3ed56
  29. run details repository_dispatch 3ab3ed56
  30. run details repository_dispatch 3ab3ed56

ncov-ingest #

GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

  1. run details schedule f5f238be
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  19. run details schedule de354686
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  22. run details workflow_dispatch de354686
  23. run details workflow_dispatch de354686
  24. run details schedule de354686
  25. run details schedule de354686
  26. 🛇
    run details schedule 03f7b8b8
  27. run details schedule 03f7b8b8
  28. run details schedule 03f7b8b8
  29. run details schedule 03f7b8b8
  30. run details schedule 03f7b8b8

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

  1. run details schedule f5f238be
  2. run details schedule f5f238be
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  19. run details schedule de354686
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  30. run details schedule 03f7b8b8

rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule 20e7697b
  2. run details schedule 20e7697b
  3. run details schedule 20e7697b
  4. run details schedule afff3d97
  5. run details schedule cf4aab17
  6. run details schedule 619455bf
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  12. run details schedule f8f426f5
  13. run details workflow_dispatch f8f426f5
  14. run details workflow_dispatch f8f426f5
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Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. run details schedule 20e7697b
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  3. run details schedule 20e7697b
  4. run details schedule afff3d97
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  6. run details workflow_dispatch 6e79a4a9
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  14. run details workflow_dispatch a1788ce2
  15. run details schedule f8f426f5
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  17. run details schedule f8f426f5

seasonal-flu #

Run Nextclade on all sequences (.github/workflows/run-nextclade.yaml)

  1. run details workflow_dispatch e2af9e6b
  2. run details workflow_dispatch e2af9e6b
  3. run details workflow_dispatch e2af9e6b
  4. run details workflow_dispatch 00cfae19
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  6. run details workflow_dispatch 7384a03e
  7. run details workflow_dispatch 2d0f3d0b
  8. run details workflow_dispatch 08d2c1b6
  9. run details workflow_dispatch 08d2c1b6
  10. run details workflow_dispatch dfa79c95
  11. run details workflow_dispatch 6e9b3c4b
  12. run details workflow_dispatch c04e5995
  13. run details workflow_dispatch c04e5995
  14. run details workflow_dispatch a1623420

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. run details workflow_dispatch e2af9e6b
  2. run details workflow_dispatch e2af9e6b
  3. run details workflow_dispatch 00cfae19
  4. run details workflow_dispatch 00cfae19
  5. run details workflow_dispatch 7384a03e
  6. run details workflow_dispatch 2d0f3d0b
  7. run details workflow_dispatch 08d2c1b6
  8. run details workflow_dispatch 08d2c1b6
  9. 🛇
    run details workflow_dispatch dfa79c95
  10. run details workflow_dispatch 6e9b3c4b
  11. run details workflow_dispatch c04e5995
  12. run details workflow_dispatch c04e5995
  13. run details workflow_dispatch 5606d218
  14. run details workflow_dispatch 5606d218
  15. run details workflow_dispatch a1623420

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. run details workflow_dispatch e2af9e6b
  2. run details workflow_dispatch e2af9e6b
  3. run details workflow_dispatch 00cfae19
  4. run details workflow_dispatch 00cfae19
  5. run details workflow_dispatch 7384a03e
  6. run details workflow_dispatch 2d0f3d0b
  7. run details workflow_dispatch 08d2c1b6
  8. run details workflow_dispatch 08d2c1b6
  9. 🛇
    run details workflow_dispatch dfa79c95
  10. run details workflow_dispatch 6e9b3c4b
  11. run details workflow_dispatch 6e9b3c4b
  12. run details workflow_dispatch c04e5995
  13. run details workflow_dispatch c04e5995
  14. run details workflow_dispatch 5606d218
  15. run details workflow_dispatch 5606d218
  16. run details workflow_dispatch a1623420

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. run details workflow_dispatch e2af9e6b
  2. run details workflow_dispatch e2af9e6b
  3. run details workflow_dispatch 00cfae19
  4. run details workflow_dispatch 00cfae19
  5. run details workflow_dispatch 7384a03e
  6. run details workflow_dispatch 2d0f3d0b
  7. run details workflow_dispatch 08d2c1b6
  8. run details workflow_dispatch 08d2c1b6
  9. 🛇
    run details workflow_dispatch dfa79c95
  10. run details workflow_dispatch 6e9b3c4b
  11. run details workflow_dispatch c04e5995
  12. run details workflow_dispatch c04e5995
  13. run details workflow_dispatch 5606d218
  14. run details workflow_dispatch 5606d218
  15. run details workflow_dispatch a1623420

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. run details workflow_dispatch e2af9e6b
  2. run details workflow_dispatch e2af9e6b
  3. run details workflow_dispatch 00cfae19
  4. run details workflow_dispatch 00cfae19
  5. run details workflow_dispatch 7384a03e
  6. run details workflow_dispatch 2d0f3d0b
  7. run details workflow_dispatch 08d2c1b6
  8. run details workflow_dispatch 08d2c1b6
  9. run details workflow_dispatch 6e9b3c4b
  10. run details workflow_dispatch c04e5995
  11. run details workflow_dispatch c04e5995
  12. 🛇
    run details workflow_dispatch c04e5995
  13. run details workflow_dispatch 5606d218
  14. run details workflow_dispatch 5606d218
  15. run details workflow_dispatch a1623420

zika #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch fe37759a
  2. run details workflow_dispatch fe37759a

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 23263aa0
  2. run details schedule 23263aa0
  3. run details schedule 23263aa0
  4. run details schedule d588b41e
  5. run details schedule d588b41e
  6. run details schedule d588b41e
  7. run details schedule d588b41e
  8. run details schedule d588b41e
  9. run details schedule d588b41e
  10. run details schedule d588b41e
  11. run details schedule d588b41e
  12. run details schedule d588b41e
  13. run details schedule d588b41e
  14. run details schedule d588b41e
  15. run details schedule d588b41e
  16. run details schedule d588b41e
  17. run details schedule d588b41e
  18. run details schedule d588b41e
  19. run details schedule d588b41e
  20. run details schedule d588b41e
  21. run details schedule d588b41e
  22. run details schedule d588b41e
  23. run details schedule 24f9f3fd
  24. run details schedule 24f9f3fd
  25. run details schedule 24f9f3fd
  26. run details schedule 24f9f3fd
  27. run details schedule 24f9f3fd
  28. run details schedule 24f9f3fd
  29. run details schedule fd634b5e
  30. run details schedule fd634b5e

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch fe37759a
  2. run details workflow_dispatch fe37759a